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The Centre is collaborating with WHO / TDR in building capacity to become one of the reference African phytochemical and anti-malarial screening centre for natural products.

The Centre is collaborating with WHO / AFRO in the documentation of the medicinal plants and traditional medicine used for malaria.

The Centre is also collaborating with Wellcome Trust Laboratories in a project on understanding of the mechanism of resistance of malaria parasites on some conventional anti-malarial drugs.

The Centre is collaborating with Kagoshima University, Center for chronic viral Diseases, Japan.

The Centre is collaborating with University of Nairobi, Kenya Agricultural Research Institute and Kenya Industrial Research Development Institute under Kenya Agricultural Productivity Project.

The Centre is collaborating with Makerere University, Maseno University, and University of Dar es Salaam under VicRes (Lake Victoria Research Initiative)